In silico simulation of molbio experiments

The website www.in-silico.com provides a software program for in silico analysis of completely sequenced bacterial genomes. The program allows users to perform PCR amplification, AFLP-PCR, and endonuclease restriction analyses on selected genomes or plasmids. Additionally, the website offers tools for ORF search by name and DNA to protein translation as well as restriction digestion of user-defined DNA sequences.

Topic

Mapping;Probes and primers;Genetic variation;Genomics;Sequencing

Detail

  • Operation: Virtual PCR;Mapping;Restriction map drawing;PCR primer design;Scaffold gap completion

  • Software interface: Web user interface

  • Language: -

  • License: -

  • Cost: Free

  • Version name: -

  • Credit: -

  • Input: -

  • Output: -

  • Contact: Joseba Bikandi oipbibij@lg.ehu.es

  • Collection: -

  • Maturity: -

Publications

  • In silico analysis of complete bacterial genomes: PCR, AFLP-PCR and endonuclease restriction.
  • Bikandi J, et al. In silico analysis of complete bacterial genomes: PCR, AFLP-PCR and endonuclease restriction. In silico analysis of complete bacterial genomes: PCR, AFLP-PCR and endonuclease restriction. 2004; 20:798-9. doi: 10.1093/bioinformatics/btg491
  • https://doi.org/10.1093/bioinformatics/btg491
  • PMID: 14752001
  • PMC: -

Download and documentation

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